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I usually scan my media with Media Elch before I move it into Kodi/Jellyfin then I know the files and folders have the right names and all Metadata is correct.
TV shows are grabbed, named and tidied with pyMedusa.
I use Kodi on a RaspberryPi with the Jellyfin add-on so if I watch something remotely then the watched status is synced everywhere.
The other alternative is “Accept All” or “Decline each one Individually by clicking three buttons to confirm your choice”