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Unless it’s a fully managed device (different to a work profile - this has to be configured when the device first boots, it’s for phones that are fully corporately owned & managed) then I think that has to be acting as a user-level CA certificate (trusted only by apps who opt in to trust it, which notably includes Chrome) not a system-level CA certificate (trusted by all apps by default). That will keep working just fine.
Previously any user could modify these certs directly, even on vanilla OS images from Google themselves, without installing Magisk or any tools at all, just by writing to disk. Right now, that’s widely used and included in the setup guides for lots & lots of tools. All of that will start breaking for users when Android 14 arrives.
I totally agree it is possible to work around this restriction, but it’s going to be significantly more complicated, and those changes will only be required because the OS used to let you read & write these files all by yourself, and now it doesn’t.
I don’t think Android should move further in a direction where it’s impossible to directly control anything unless you install a 3rd party modification to the root daemon. That’s not a good result. These are important settings and the OS itself should allow you to control them (behind reasonable safeguards & warnings, but still).